Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001566

Transcript Name: gnsaoa
Type: Overlapping
Genomic Location: chr4:4387148-4389219
Nearest Gene: gnsa (NM_001030208)


gnsaoa
Exons
43871484389219




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.76 1.58 0.24 0.55 0.61 1.1 1.27 0.9 1.14 0 2.18 1.51 2 1.63 1.71



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 112-237 MYVEVGVSWSFEVRKTAVVLRSGRPGRVWRRCGHHHEERPAV
2. 116-376 MLKLGSRGALRSGKLLSYCGAAVQGECGAGVDTIMKKGLRFDLFSRKSMETLAWMESDMDEPLTRVDHSLFCNFMNTRSAPTRTSVR
3. 519-551 MQIFNFSKTAH
4. 809-838 MLVLIIISTI
5. 969-1040 MSRELLHKIKLLNWIKVKIFLYVI
6. 1303-1392 MDHLLDFLHYPNITSKLCFRLLFVFSTIQL
7. 1415-1462 MGKVEGLVIISQIINH
8. 1519-1710 MLLQTDLGYFLYEIVSLVKYILKCYLHIYYTCSCFSFLLETRLCSCLHADRSFTFLTFPPHTLF
9. 1587-1820 MLLAHILYMLLFFFFTRNTSMFLFARRQIFYIFNFSATYSILRVFKYFIFAFISVSVIFIVIVIIYHIHVYLFSVCKY
10. 1792-1866 MYIYFQSVNIEIQSQFYLRTITLLH
11. 1986-2036 MHVILCMTLYNTNKMYI

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: