Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001565

Transcript Name: znf800boa
Type: Overlapping
Genomic Location: chr4:3316881-3326973
Nearest Gene: znf800b (NM_200436)


znf800boa
Exons
33168813326973




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.12 1.87 0.95 0.63 0.87 0.93 1.23 1.14 1.65 1.14 1.97 1.71 1.97 1.54 1.51



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 180-272 MTPFSAKQQPSGRKRDAFTRLKHTQVASSYV
2. 268-309 MFEILKEACCCSHR
3. 358-447 MLRDASTRMNVTLSSTRALLSKHLKSIRVP
4. 720-806 MCEYKTNLPHSQEVLSKRSSVRVSRRVDG
5. 823-900 MTFRLKLIYAANNNAVNHFGYHANKF
6. 887-934 MQTSFKQFKSLQLALK
7. 969-1013 MKSSISQLNKLLNFA
8. 1080-1124 MCGILLIKKKSNKAN
9. 1220-1309 MSLILLLIVLLVGYLTQKLIYIYSICRIIM
10. 1321-1368 MQNKRSMQSKLTSGAG
11. 1433-1465 MDGWVDRQTDR
12. 1577-1609 MDGWMDGWIDR
13. 1878-1919 MYFCNSRNAKYHQT
14. 1900-1941 MQNIIKPENTHLYH
15. 2001-2042 MPINTSNATSGESE
16. 1951-2121 MGQEDTNCIKDTRERDKCLLTPPMRHLESQNSPAGIKIRPSKSLQLLWLGHTEALQV
17. 2231-2395 MTFSNNGKVVVIRTHATMHFSVDELNRKKNIREIIHIASGSFLYVDQAVSRSQGF
18. 2477-2533 MTENKNKKAKKVRLLSEIN
19. 2561-2665 MIYKFQFTPYPPLDIQLWRKTVQEKKTLHQFRDFF
20. 2536-2703 MLAWDQYWDDLQISIYPLPTPGHTAVAKNCSRKKDSASIQRFFLNASLFSLQSILI
21. 2669-2740 MHRYSLFNQFLFSFKPNMVLWASF
22. 2886-2933 MFNSRWRSKTSFKPWT
23. 3597-3710 MSLWASFLTADGAQKLVFNSRRCSRLLFNSRWRSKANF
24. 3933-3977 MALKGQPLTVDVTLC
25. 3974-4015 MLVLNSRWHSKASL
26. 4636-4668 MAQYGLFFHHP
27. 4646-4693 MDFFFITHEEERLCIQ
28. 4668-4727 MRKSACAFSEQCKLAFISRD
29. 4785-4883 MIILRLSGICKELYASRVWLLVSIQHHLLLKLS
30. 4838-4969 MAACKHTAPSAVKTIINAVILHARPVDGDIICKETSSARAHTVL
31. 4917-5042 MVISSVKKHQVPVHIQFCSPLNCCFGCLFVLFFSVFMPHVVP
32. 5042-5131 MSRPHGICARRILQIFSPSFILFIYLCKCV
33. 5125-5154 MCVNLDLFSF
34. 5299-5331 MWIQLDLHCKH
35. 5457-5486 MSADSVWLYS
36. 5410-5502 MILQIFTKILRRNSKKCPQIPSGSTHKLMNH
37. 5559-5603 MPHYRRKNNKINTQK
38. 5723-5764 MEANGFAQCFLLKS
39. 5908-5943 MLTCCFVHVILK
40. 5916-5972 MLLCSCYFKIMIISKHVCK
41. 5962-5997 MFANKAQKNKNG
42. 6118-6189 MLHRNIFGKFQKFLVVFRQNIVLS
43. 6237-6272 MYKSQFRNNLHL
44. 6782-6982 MAWKGSGVGFLALTVSHWQQGNTVIIVHYVCGGVKKRRHSKHKPGFTESTLSQQLYMIIPPPPPHII
45. 7021-7119 MKVQQKGSLEEFCLRKKYYANDEDLLRDQTRGN
46. 7082-7132 MTKTFSEIKQEEIEFVL
47. 7212-7289 MRNMNFIIVQYMSCFWFLGLVLTLCG
48. 7283-7315 MWIKCPKNVQK
49. 7294-7386 MPQKRAKIIQCLSANCALQAYLEKSGMHINL
50. 7529-7621 MYTYKMYILWGLLTLFCDAEGCSFLQLYWNC
51. 7581-7796 MRKGARFCNYIGTADSEWEKLLENNKQLKMVKGLALQNSVFMNIHNNKYNIIRKISVCNIKQHNKLFLTSKN
52. 7815-7895 MEVSSQEDSNGCAHSYMKNKVNSHSSI
53. 7974-8027 MVDNRLVQTYLEIIIISV
54. 8227-8286 MRPGMCTLLFKIQVFMIIIN
55. 8440-8472 MLCSQILYLFD
56. 8405-8557 MLRLLFFMIKGACYAPKFCIYLIKHAVINSKIVKYYYNLNTYFCLLIYYNI
57. 8768-8800 MVEHILGAQMT
58. 9162-9200 MAYKYTSAQRVKH
59. 9423-9488 MNLSALQIDTVESEGVFSSVFT
60. 9495-9524 MKNKTQYVHR
61. 9514-9567 MCIAECLKRVVCWLKIGN
62. 9528-9608 MSETGRVLVKNRKLKVLRHRHFKATLR
63. 9608-9637 MKLFVRFFFS
64. 9684-9725 MLRLNRSGDRGSGG
65. 9865-9948 MNLSYMNFIIVQFTFCLQFPGLVLTLCG
66. 9953-10036 MTIKSVNKSKLTCKLCIAGMLRKIRHAQ

Variant Information


Variant PositionrsIDReferenceAlternate
3317248 rs180034991 A G

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: