Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001563

Transcript Name: bcap29oa
Type: Overlapping
Genomic Location: chr4:2535177-2537880
Nearest Gene: bcap29 (NM_001024220)


bcap29oa
Exons
25351772537880




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.32 2.34 2.17 2.05 2.02 1.72 1.72 1.56 1.99 1.83 1.53 1.54 1.9 1.63 1.83



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 117-149 MMYAKLKVVPR
2. 446-514 MIYAKLKVLPSYISLKNNNFYQS
3. 895-930 MSLITQKGEEFL
4. 1081-1113 MLENCETALIM
5. 1177-1266 MMIIVQIYIVWCVRSSSFLFYLRCPSDSGN
6. 1517-1597 MIFPRLSSLFSRPKVLGNVYSYMVKEK
7. 1600-1629 MHVQIYCSIS
8. 1695-1730 MLSLFQNFVGFS
9. 1604-1771 MFKFIAAYRKTRSNLFSFNLYLNRCKIDLNNAFTFPKLCGFFLNFSRPGKCHVQLP
10. 1753-1791 MPCPTSMTFPGFP
11. 1758-1820 MSNFHDFSRFSMTVLTLLSDI
12. 1820-1903 MIMIYVIKWVSDRTRSTASLVIIIGENV
13. 2013-2042 MEAFVHHFVV
14. 1990-2058 MLMVSCETWKHLYIILLSKTLQI
15. 2304-2336 MLHFLIIFIIL
16. 2457-2567 MYLFWHILSIRVIIYYLYLKLINHYFVNFLLFQVIVI
17. 2423-2584 MFLLSLYLKVLNVFVLAHFIYSCHHLLFVSKINKSLLCKFPVISSYCYLILQHV
18. 2580-2615 MFNCFLFGLVLY
19. 2625-2681 MFIILNLKLPNICIYLFIF

Variant Information


Variant PositionrsIDReferenceAlternate
2535521 rs179742751 G GA
2535525 rs179742813 A AA
2536977 rs179742387 T A
2536997 rs179742630 T C
2537017 rs179742761 A G
2537218 rs179742778 A T
2537229 rs179742323 T C
2537321 rs179742292 T C
2537322 rs179742769 T A
2537344 rs179742535 C T

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: