Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001559

Transcript Name: lnc_ripply2
Type: lincRNA
Genomic Location: chr4:669148-670533
Nearest Gene: ripply2 (NM_001039109)


lnc_ripply2
Exons
669148670533




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.41 0.46 0.33 0.14 -0.54 -0.22 -0.48 0.19 0.24 2.47 1.46 0 1.46 1 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 963-1139 MRVCVCVCVCVCVCVCVCVCVCVCARVCVCACVCVCVCVCVFLLCHMQDFSPLWHLDYI
2. 971-1156 MCVCVCVCVCVCVCVCVCVCVCACVRVCVCVCVCVCVCVSAVPHAGFQPSLASGLYLSVWFQ
3. 1163-1204 MRKHCAFTSLTLAV
4. 1204-1239 MRHQLNIISTVS
5. 1281-1367 MLQFLSLDVIRSHYTTGALEILLKLPVKS

Variant Information


Variant PositionrsIDReferenceAlternate
669236 rs41040952 C T

References

lncRNA has been predicted by:

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.
Plos One(2013) 8(12):e83616
PMID: 24391796

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: