Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001557

Transcript Name: rtcboa
Type: Overlapping
Genomic Location: chr4:388071-389997
Nearest Gene: rtcb (NM_213103)


rtcboa
Exons
388071389997




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.11 0.99 1.03 0.76 1.02 1.51 1.52 1.75 1.59 1.58 2.16 2.62 1.7 2.18 2.46



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 51-212 MRPYSSQCSLSSAQAYPSLRDQSTPISNASSRSLHTHTQTVLQILSFTSAVLRL
2. 297-338 MSATKAIFMAGTFQ
3. 292-345 MPCQQPRLFSWQEHFNNK
4. 455-535 MSLREFISLKSLLESIKISKMCFINVF
5. 610-660 MVIYCFYYYYYLVFMLV
6. 698-751 MNSVLFRVWIINFVFAVK
7. 755-796 MQIYTCVAFILRFL
8. 796-825 MISYFFLFSV
9. 1036-1071 MAFFKPGKVLEK
10. 1004-1117 MKTWESHAILTWHFLSLERFWKSDGKQISVYLNIGQLS
11. 1257-1310 MHCFSFTTHMQTLHENRS
12. 1446-1517 MTPLEPTPTGMWSKRDCASCSFTG
13. 1310-1588 MKIDLKVLEASWNFSSKNVYEPWELMLGTGVKLCAFLQCLLCTHRNDALGADSDRDVVEERLCQLLLHRLNVALIQVCAQQTNTTVNIETHTA
14. 1625-1726 MMKYLRITNKHIISTYLERRLRPDSPCRTLPCSR
15. 1702-1746 MSNAAMFPIANPYPE

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: