Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001556*

Transcript Name: lnc_msgn1
Type: lincRNA
Genomic Location: chr4:2589-3835
Nearest Gene: msgn1 (NM_182882)


lnc_msgn1
Exons
25893835





*A ribosome profiling study carried out by Pauli et. al. (2013) suggests this proposed lncRNA could have coding potential.

Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 2.55 2.69 2.5 2.26 2.56 1.92 2.22 1.53 2.26 1.9 2.3 2.47 2.16 2.19 2.42



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 354-398 MKVTRNALTRSRRRR
2. 585-998 MAEFIQLNKPTEAKTASQNPQPPPAKKIRLEEQMFTAKKINGGAEQQNYSSKPKNKKAKPEKERERVREKEKKKHKPAENHLSAKPENGELKPQPLKGRSRRVELRCRRVTGRCLRGLWCFWRVSADSPSVCVERPRR

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.
Cell(2011) 147: 1537-1550
PMID:22196729

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: