Predicted ORFs


Transcript Name: hoxc3aia
Type: Intronic
Genomic Location: chr23:36162679-36167015
Nearest Gene: hoxc3a (NM_001134685)


Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.86 1.33 0.55 0.42 1.71 0.98 -0.09 0 1 2.59 0 0.79 0 0.71 0

Mutant Information

ChromosomeMutant PositionZFIN ID
chr23 36163788 la014423

Predicted Open Reading Frames


Variant Information

Variant PositionrsIDReferenceAlternate
36164556 rs41230629 CATGC C
36164653 rs40894256 TT T
36166407 rs40796145 T A


lncRNA has been predicted by:

Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.
Cell(2011) 147: 1537-1550

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: