Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC001258

Transcript Name: tmed4oa
Type: Overlapping
Genomic Location: chr23:34290232-34294954
Nearest Gene: tmed4 (NM_001002134)


tmed4oa
Exons
3429023234294954




Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.46 0.28 0.2 0.33 0.58 0.84 1.04 1.28 0.92 1.4 1.47 1.79 1.27 1.03 1.21



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 91-264 MDHHKTRWFVLSLVMRKRSSRYCGKTIFCQPLQDLAKSSKCHKIKRFLISELCRFIHS
2. 317-358 MWSLTIYFQTFNST
3. 383-481 MIYLLQLIHQAFNGPCDTVEIIIIKPPFIYNDV
4. 420-515 MAHVIQLKLLLLNPLLFIMMFDRAKKFSQYVR
5. 508-549 MSDNIFLLVKVLFV
6. 848-883 MFRNVLKKSPLN
7. 1068-1136 MLKLIKIIFCFLLAHIVIYLGEQ
8. 1143-1244 MCRASVFPILVNFRLICYCEFFSFYTNPFTAWML
9. 1437-1469 MQCFLYNRRPT
10. 1638-1706 MRKCTCFRDCLRTSDSVAYGRND
11. 1609-1782 MLRHIDLILKCGSAPVFAIVLELPIQSPMGEMTRNNKRQKMAKLLAQQTNVCMTTQTK
12. 1859-1894 MKVNVTGSRETK
13. 1855-1935 MNESECDRKSRDKMIQMAAPTRQLRIR
14. 1954-1998 MQVIPLNENVCCGNL
15. 1973-2062 MKMFVVVIFNQVLTICVTILCFWTGKSSLM
16. 2071-2112 MLQPLYSDPHPSYC
17. 2133-2234 MCKKKARPPTQNSSTHSNKSFNFKNFQFTQTLKE
18. 2273-2344 MAVNVNQLYFYNATAKLYALNALN
19. 2372-2401 MSPKYAEIRK
20. 2401-2529 MILAKKSISSHCHHAVGSCLVPNLIEFLYSAKRKGNSSETVDN
21. 2441-2596 MLWAVVLSRTLLSFFILLNAKETAQKQWTIEQTVLGAVIQYIFREFHILHVF
22. 2589-2621 MFFELGYIFFF
23. 2642-2671 MKNFSIAWHF
24. 2662-2691 MALLIIELVC
25. 2920-2994 MVTAFQHFSKYLLLCSTKKRREERK
26. 2829-3005 MSSFILLNIKMICLRKLKSSTVGKTYTMEINGYSFPAFFQISSFVFNKKKKGRKKVKLV
27. 2783-3025 MKTYTFTFPQVVSNLYEFLYSAEHKDDMFKKAEIIHCRKNIYHGNQWLQLSSIFPNIFFCVQQKKEGKKESETGLKQVKCE
28. 3029-3067 MMTLLSVLSELSL
29. 3359-3403 MYMFPQFLFNVEKIV
30. 3453-3560 MMKVRNISLDILLYICIQLKVLFIGFKGLTWVIYVN
31. 3756-3785 MENLKIYLTA
32. 3869-3898 MLFVVVVFLQ
33. 4020-4079 MVCLVEQGLIILTLKCFLKN
34. 4064-4144 MFFKKLKTAFILAEIKHIRISPEEKIL
35. 4440-4469 MSLFEMRNKH
36. 4414-4575 MLHCICHILCLYLRCEISIKTSLYILLLCHGFYSRTSFPPANSAILVELEWRQI
37. 4502-4600 MVFTVVPVFHLQTVPSWWSWSGGRFDALLVCVR

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within the exonic region of the transcript



References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: