Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC000468

Transcript Name: pcdh19ia
Type: Intronic
Genomic Location: chr14:41625291-41628341
Nearest Gene: pcdh19 (NM_001127519)


pcdh19ia
Exons
4162529141628341





Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 0.93 0.89 0.6 0 0.95 0.34 0.57 -0.44 1.04 1.23 0 0 0 0 0



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence

Variant Information


Variant PositionrsIDReferenceAlternate
41626824 rs179549937 A G
41626851 rs179549795 A C
41626882 rs40833773 G A

References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: