Transcript
      Expression
      Mutation
      Predicted ORFs
      Variation
      References

ZF_LNC000167

Transcript Name: elovl7boa
Type: Overlapping
Genomic Location: chr10:46574126-46577344
Nearest Gene: elovl7b (NM_199778)


elovl7boa
Exons
4657412646577344






Expression Information

log10FPKM values for lncRNA in different stages
  2-4 cell 1-K cell Dome Shield Bud 1 dpf 2 dpf 3 dpf 5 dpf Adult Heart Blood Brain Kidney Liver
log10FPKM values 1.98 1.83 1.87 2.16 1.18 0.55 0.73 0.89 1.01 0.77 0.34 1.73 -0.02 0.31 0.91



Mutant Information


ChromosomeMutant PositionZFIN ID

No retroviral insertion mapping detected




Predicted Open Reading Frames


ORFRangeSequence
1. 550-606 MGCRPTKLPEFRSKLRGAR
2. 641-697 MSGTRCARRRFALKEQRKV
3. 697-801 MKMTDRQVKLQDKRSPPHQHQQETGCVSSQQWQIC
4. 798-845 MLKSNISSRYTHAAVL
5. 952-984 MEECGPRFPRC
6. 987-1130 MDREWAEVQLESRAADLLCAVSVSGLGLGQNTMRKSFYSLTIAQQRRV
7. 998-1234 MGGGAAGEQGCRSSVCGFSFRARSRPEHNEKELLLTHYCTTAEGVNSTHTHTHTHTHTSGKTRVYSSVDPHKCKYSLLE
8. 1213-1320 MQIQPSRIVPTSSALHNTRQLSGEHQTSLSLTNERD
9. 1310-1339 MREIKLIYCE
10. 1696-1752 MLENYQNPPWSRHLNPAPH
11. 1722-1772 MEPTSEPSTTLTSVPQV
12. 1845-1886 MQRLSNIGAVYEAI
13. 1876-1908 MRLYEPYMSRI
14. 1942-1974 MRLYEPYMSSI
15. 2019-2051 MRLYEPYMSRI
16. 2106-2150 MSRILVVYEAFMRRI
17. 2150-2194 MSRILGVYEPYMRRI
18. 2205-2249 MSRILVVYEAFMRRI
19. 2315-2359 MSRILVVYEAFMRRI
20. 2425-2469 MSRILVVYEAFMRRI
21. 2535-2579 MSRILVVYEAFMRRI
22. 2645-2689 MSRILVVYEAFMRRI
23. 2713-2748 MFSDLSNFRISL
24. 2872-2958 MKISQMMSITACSASGMRIRLILVKPEHT
25. 3137-3217 MILKHRAGVSTEKPASPDSHIRHYGLV

Variant Information


Variant PositionrsIDReferenceAlternate

No variation reported in dbSNP within this genomic loci


References

lncRNA has been predicted by:

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Genome Research (2012) 22:577-591
PMID: 22110045

Expression information has been derived from:

Retroviral insertion lines mapping to lncRNA loci has been derived from: